Index

A

add_edges() (CoRe.ncip.ncip method)

apply_BC() (CoRe.ncip.ncip method)

C

compute_p_values() (in module CoRe.fnGO) compute_p_values_old() (in module CoRe.fnGO) compute_q_values() (in module CoRe.fnGO) construct_C() (CoRe.ncip.ncip method)

construct_edges() (CoRe.ncip.ncip method) construct_exo_edges() (CoRe.ncip.ncip method) CoRe.fnGO module

D

disconnect_drug_nodes() (CoRe.ncip.ncip method)

disconnect_nodes() (CoRe.ncip.ncip method)

E

entropy_drop_and_gain() (CoRe.ncip.ncip method)

F

findGOcontainer() (in module CoRe.fnGO)

findGOembedding() (in module CoRe.fnGO)

G

get_final_state() (CoRe.ncip.ncip method)

get_final_state_old() (CoRe.ncip.ncip method)

I

initialize_network_state() (CoRe.ncip.ncip method)

L

load_data() (CoRe.ncip.ncip method)

load_graph() (CoRe.ncip.ncip method)

M

make_graph() (CoRe.ncip.ncip method) MinMaxGOsets() (in module CoRe.fnGO)

module CoRe.fnGO

N

ncip (class in CoRe.ncip)

P

p_adjust_bh() (in module CoRe.fnGO)

R

read_embedding() (in module CoRe.fnGO)

readGOBPs() (in module CoRe.fnGO) readGOsets() (in module CoRe.fnGO)

S

save_edges_and_nodes() (CoRe.ncip.ncip method) save_network() (CoRe.ncip.ncip method)

save_nullspace() (CoRe.ncip.ncip method) state_entropy() (CoRe.ncip.ncip method)

T

total_genes() (in module CoRe.fnGO)

W

write_nodes_and_edges() (CoRe.ncip.ncip method)